Suplatov, Dmitry : rechercher sur Z-Library

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1

Robust enzyme design: Bioinformatic tools for improved protein stability

Suplatov, Dmitry, Voevodin, Vladimir, Švedas, Vytas

Journal:

Biotechnology Journal

Année:

2015

Langue:

english

Fichier:

PDF, 748 KB

english, 2015

2

easyAmber: A comprehensive toolbox to automate the molecular dynamics simulation of proteins

Suplatov, Dmitry, Sharapova, Yana, Svedas, Vytas

Journal:

Journal of Bioinformatics and Computational Biology

Année:

2020

Fichier:

PDF, 4.09 MB

2020

3

Bioinformatic analysis of protein families for identification of variable amino acid residues responsible for functional diversity

Suplatov, Dmitry, Shalaeva, Daria, Kirilin, Evgeny, Arzhanik, Vladimir, Švedas, Vytas

Journal:

Journal of Biomolecular Structure and Dynamics

Année:

2014

Langue:

english

Fichier:

PDF, 251 KB

english, 2014

4

Zebra: a web server for bioinformatic analysis of diverse protein families

Suplatov, Dmitry, Kirilin, Evgeny, Takhaveev, Vakil, Švedas, Vytas

Journal:

Journal of Biomolecular Structure and Dynamics

Année:

2014

Langue:

english

Fichier:

PDF, 432 KB

english, 2014

5

The βD484N mutant of penicillin acylase from Escherichia coli is more resistant to inactivation by substrates and can effectively perform peptide synthesis in aqueous medium

Shcherbakova, Tatyana A., Panin, Nikolay V., Suplatov, Dmitry A., Shapovalova, Irina V., Švedas, Vytas K.

Journal:

Journal of Molecular Catalysis B: Enzymatic

Année:

2015

Langue:

english

Fichier:

PDF, 397 KB

english, 2015

6

Parallel workflow manager for non-parallel bioinformatic applications to solve large-scale biological problems on a supercomputer

Suplatov, Dmitry, Popova, Nina, Zhumatiy, Sergey, Voevodin, Vladimir, Švedas, Vytas

Journal:

Journal of Bioinformatics and Computational Biology

Année:

2016

Langue:

english

Fichier:

PDF, 2.17 MB

english, 2016

7

Experimental and computational studies on the unusual substrate specificity of branched-chain amino acid aminotransferase from Thermoproteus uzoniensis

Bezsudnova, Ekaterina Yu., Stekhanova, Tatiana N., Suplatov, Dmitry A., Mardanov, Andrey V., Ravin, Nikolai V., Popov, Vladimir O.

Journal:

Archives of Biochemistry and Biophysics

Année:

2016

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2016

8

The visualCMAT: A web-server to select and interpret correlated mutations/co-evolving residues in protein families

Suplatov, Dmitry, Sharapova, Yana, Timonina, Daria, Kopylov, Kirill, Švedas, Vytas

Journal:

Journal of Bioinformatics and Computational Biology

Année:

2017

Langue:

english

Fichier:

PDF, 417 KB

english, 2017

9

Neuraminidase A from Streptococcus pneumoniae has a modular organization of Catalytic and Lectin Domains separated by a flexible linker

Sharapova, Yana, Suplatov, Dmitry, Švedas, Vytas

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 3.49 MB

english, 2018

10

Bioinformatic analysis of the fold type I PLP-dependent enzymes reveals determinants of reaction specificity in l -threonine aldolase from Aeromonas jandaei

Fesko, Kateryna, Suplatov, Dmitry, Švedas, Vytas

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 875 KB

english, 2018

11

Human p38α Mitogen-Activated Protein Kinase in the Asp168-Phe169-Gly170-in (DFG-in) state can bind allosteric inhibitor Doramapimod

Suplatov, Dmitry, Kopylov, Kirill, Sharapova, Yana, Švedas, Vytas

Journal:

Journal of Biomolecular Structure and Dynamics

Année:

2018

Langue:

english

Fichier:

PDF, 2.50 MB

english, 2018

12

Computational Design of a pH Stable Enzyme: Understanding Molecular Mechanism of Penicillin Acylase's Adaptation to Alkaline Conditions

Suplatov, Dmitry, Panin, Nikolay, Kirilin, Evgeny, Shcherbakova, Tatyana, Kudryavtsev, Pavel, Švedas, Vytas, Permyakov, Eugene A.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 2.42 MB

english, 2014

13

Probing the Substrate Specificity and Intersubunit Interactions of Brevundimonas Diminuta Glutaryl Acylase with Site-Directed Mutagenesis

Eldarov, Michael, Lyashenko, Anna, Sherbakova, Tatyana, Suplatov, Dmitry, Kopylov, Kirill, Svedas, Vytas

Journal:

American Journal of Biochemistry and Biotechnology

Année:

2014

Langue:

english

Fichier:

PDF, 501 KB

english, 2014

14

Biochemical and structural insights into PLP fold type IV transaminase from Thermobaculum terrenum

Bezsudnova, Ekaterina Yu., Boyko, Konstantin M., Nikolaeva, Alena Yu., Zeifman, Yulia S., Rakitina, Tatiana V., Suplatov, Dmitry A., Popov, Vladimir O.

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 3.14 MB

english, 2019

15

parMATT: parallel multiple alignment of protein 3D-structures with translations and twists for distributed-memory systems

Shegay, Maksim V, Suplatov, Dmitry A, Popova, Nina N, Švedas, Vytas K, Voevodin, Vladimir V, Valencia, Alfonso

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 148 KB

english, 2019

16

Yosshi: a web-server for disulfide engineering by bioinformatic analysis of diverse protein families

Suplatov, Dmitry, Timonina, Daria, Sharapova, Yana, Švedas, Vytas

Journal:

Nucleic Acids Research

Année:

2019

Langue:

english

Fichier:

PDF, 791 KB

english, 2019

17

Zebra2: advanced and easy-to-use web-server for bioinformatic analysis of subfamily-specific and conserved positions in diverse protein superfamilies

Suplatov, Dmitry, Sharapova, Yana, Geraseva, Elizaveta, Å vedas, Vytas

Journal:

Nucleic Acids Research

Année:

2020

Fichier:

PDF, 1.73 MB

2020

18

vsFilt: A Tool to Improve Virtual Screening by Structural Filtration of Docking Poses

Gushchina, Irina V., Polenova, Aleksandra M., Suplatov, Dmitry A., Å vedas, Vytas K., Nilov, Dmitry K.

Journal:

Journal of Chemical Information and Modeling

Année:

2020

Fichier:

PDF, 933 KB

2020

19

Catalytic and Lectin Domains in Neuraminidase A from Streptococcus pneumoniae are Capable of an Intermolecular Assembly: Implications for Biofilm Formation

Sharapova, Yana, Å vedas, Vytas, Suplatov, Dmitry

Journal:

Année:

2020

Fichier:

PDF, 31.96 MB

2020